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ISSN 2304-3415, Russian Open Medical Journal
2018. Volume 7. Issue 2. Article CID e0204 DOI: 10.15275/rusomj.2018.0204_
Original article
The immune response mediator genes polymorphic variants as predictors of the etanercept efficacy in
juvenile idiopathic arthritis
1 1 1 1 __1 Q
Liliia Sh. Nazarova , Ksenia V. Danilko , Viktor A. Malievsky , Akhat B. Bakirov , Tatiana V. Viktorova 1,3
1 Bashkir State Medical University, Ufa, Russia 2 Ufa Research Institute of Occupational Health and Human Ecology, Ufa, Russia 3 Institute of Biochemistry and Genetics, Ufa, Russia
Received 2 December 2017, Revised 4 March 2018, Accepted 6 March 2018
© 2017, Nazarova L.S., Danilko K.V., Malievsky V.A., Bakirov A.B., Viktorova T.V. © 2017, Russian Open Medical Journal
Abstract: Objective — The aim of the study was to investigate the relationship of the alleles and genotypes of the immune response mediator genes polymorphic loci (rs1800629, rs909253, rs16944, rs6822844, rs2104286, rs1800795, rs1800872, rs3087243, rs755622 rs28362491, rs2240336, rs2476601) with the etanercept efficacy in juvenile idiopathic arthritis (JIA) patients.
Material and Methods — The study included 39 JIA patients from Bashkortostan, Russia. Achieving the American College of Rheumatology Pediatric 70 (ACR Pedi 70) response was regarded as the presence of the response to etanercept (otherwise - as the absence), while achieving clinical remission on medication - as the sufficient response (otherwise - as the insufficient). Genotyping was performed using real-time polymerase chain reaction method.
Results — The predictors of an increased risk of the non-response to etanercept were the IL1B rs16944*TT (pcor=0.023), NFKB1 rs28362491*II (pcor=0.042) genotypes, and of the increased risk of the insufficient response to etanercept - the IL2RA rs2104286*AA (pcor=0.010), NFKB1 rs28362491*II (pcor=0.026) genotypes. The markers of the decreased risk of the non-response to etanercept were the IL1B rs16944*C (pcor=0.046), NFKB1 rs28362491*D (pcor=0.029) alleles, and of the decreased risk of the insufficient response to etanercept - the IL2RA rs2104286*AG genotype (pcor=0.049), IL2RA rs2104286*G allele (pcor=0.005).
Conclusion — In this study the association of the alleles and genotypes of the IL1B rs16944, IL2RA rs2104286, NFKB1 rs28362491 polymorphic loci with the etanercept efficacy in JIA patients was established.
Keywords: juvenile idiopathic arthritis, polymorphic loci, etanercept efficacy, predictors.
Cite as Nazarova LS, Danilko KV, Malievsky VA, Bakirov AB, Viktorova TV. The immune response mediator genes polymorphic variants as predictors of the etanercept efficacy in juvenile idiopathic arthritis. Russian Open Medical Journal 2018; 7: e0204.
Correspondence to Liliia Sh. Nazarova. Address: 47, Zaki Validi Str., Ufa, 450077, Russia. Phone: +7 (347) 273-58-75. E-mail: lilinaz19@mail.ru.
Introduction
Juvenile idiopathic arthritis (JIA) is the most common chronic rheumatic disease in children. The disease has no known cause, develops before the 16th birthday and is characterized by persistent joint inflammation (longer than 6 weeks) [1-3].
It was shown, that JIA can lead to severe disability and is accompanied by a significant impairment in the quality of life of patients [1, 4]. The important role in the preventing of JIA progression and patients disability is given to the timely appointment of an adequate therapy [5-8].
The main therapeutic agents for the JIA treatment include nonbiologic and biologic disease-modifying antirheumatic drugs (DMARDs), non-steroidal anti-inflammatory drugs (NSAIDs) and glucocorticosteroids, but their effectiveness is different in patients [7, 8]. Therefore, it is an essential problem to find the predictors of the corresponding drugs efficacy, primarily for the DMARDs.
According to the American College of Rheumatology (ACR) recommendations for the treatment of JIA (2011), three tumor necrosis factor alpha (TNFa) inhibitors (etanercept, adalimumab
and infliximab) are recommended for the patients with an active arthritis and an insufficient response to the previous therapy [7].
Etanercept is a fully humanized soluble TNF receptor, which binds to TNFa and attenuates its effects [1]. Many cytokines, including TNFa, lymphotoxin alpha (LTa), macrophage migration inhibitory factor (MIF), interleukins (ILs), and other regulatory molecules (such as cytotoxic T-lymphocyte associated protein 4 (CTLA4), nuclear factor kappa B subunit 1 (NF-kB1), protein tyrosine phosphatase, non-receptor type 22 (PTPN22)), as well as their genes polymorphisms are believed to play an important role in JIA pathogenesis and the disease progression [9-11]. The complex interaction of immune cells and mediators determines the specific clinical manifestations of JIA [12]. Thus, it can be assumed, that the changes in the regulatory molecules production and underlying genetic factors also affect the treatment effectiveness in JIA.
The aim of the study was to investigate the relationship of the alleles and genotypes of the immune response mediator genes polymorphic loci (TNFA rs1800629 (-308G>A), LTA rs909253
ISSN 2304-3415, Russian Open Medical Journal
2018. Volume 7. Issue 2. Article CID e0204 DOI: 10.15275/rusomj.2018.0204_
(252A>G), IL1B rs16944 (-511C>T), IL2RA rs2104286, IL6 rs1800795 (-174G>C), IL10 rs1800872 (-592C>A), CTLA4 rs3087243, MIF rs755622 (-173G>C), NFKB1 rs28362491 (-94I>D), PADI4 rs2240336, PTPN22 rs2476601 (1858G>A)) and the intergenic region locus (IL2-IL21 rs6822844) with the etanercept efficacy in JIA patients.
Material and Methods
Study design
A case-control study was conducted. The study was approved by Local ethical committee of Bashkir State Medical University (Ufa, Russia). The parents of all patients signed the voluntary informed consent.
JIA patients' characteristics
Initially the whole JIA group included 330 children, who underwent examination and treatment in the Republican Children's Clinical Hospital (Ufa, Russia) in 2012-2017 years. The JIA diagnosis was established according to the International League of Associations for Rheumatology (ILAR) criteria [3].
The inclusion criteria to the JIA group were:
i) the presence of arthritis;
ii) the duration of arthritis more than 6 weeks;
iii) the patient's age less than 18 years;
iv) the onset of the disease at the age less than 16 years;
v) the absence of other diseases accompanied by arthritis;
vi) the signing of the voluntary informed consent by the patient's parents.
The exclusion criteria were:
i) the duration of arthritis less than 6 weeks;
ii) the patient's age 18 years and over;
iii) the onset of the disease at the age 16 years and over;
iv) the established diagnosis of other diseases accompanied by inflammation in the joints;
v) the refusal to participate in the study by the patient or his parents.
The etanercept therapy (in a combination with methotrexate) was prescribed to 48 patients. The efficacy of the therapy was assessed in 39 JIA patients aged 1.9 to 16.7 years. The mean age of 39 examined JIA patients was 8.4±3.7 years, girls/boys ratio -1.8/1.0.
According to the ILAR criteria, the following JIA subtypes were presented: systemic arthritis (n=3), rheumatoid factor positive polyarthritis (n=3), rheumatoid factor negative polyarthritis (n = 16), persistent oligoarthritis (n = 1), extended oligoarthritis (n=9), enthesitis related arthritis (n=5), psoriatic arthritis (n = 1), undifferentiated arthritis (n=1). The duration of the etanercept treatment was from 8 months to 7 years. Achieving the ACR Pediatric 70 (ACR Pedi 70) response was regarded as the presence of the response to etanercept (otherwise - as the absence), while achieving clinical remission on medication (Wallace et al., 2011) was regarded as the sufficient response to etanercept (otherwise -as the insufficient) [1, 6, 13-15]. The presence of the response to etanercept was observed in 27 patients (69.23%), while the sufficient response - in 21 patients (53.85%).
Experimental methods
Deoxyribonucleic acid (DNA) was isolated from the lymphocytes of the whole blood samples using standard phenolchloroform method [16].
Twelve polymorphic loci (TNFA rs1800629 (-308G>A), LTA rs909253 (252A>G), IL1B rs16944 (-511C>T), IL2-IL21 rs6822844, IL2RA rs2104286, IL6 rs1800795 (-174G>C), IL10 rs1800872 (-592C>A), CTLA4 rs3087243, MIF rs755622 (-173G>C), NFKB1 rs28362491 (-94I>D), PADI4 rs2240336, PTPN22 rs2476601 (1858G>A)) were examined. The genotyping was performed by real-time polymerase chain reaction (PCR) method using StepOnePlus™ Real-Time PCR System (Applied Biosystems, USA) and commercial kits of sequence-specific primers and allele-specific probes (DNK-syntez, Russia).
Statistical analysis
The differences between the frequencies of the polymorphic loci alleles and genotypes in the studied groups were assessed using two-tailed Fisher's exact test in Microsoft Excel software. The odds ratio (OR) with 95% Baptista-Pike confidence interval (CI) were calculated for the identified markers in Microsoft Excel and R v.3.4.2 software [17].
The models of inheritance (co-dominant, dominant, recessive, over-dominant and log-additive) were studied by applying logistic regression in the SNPStats package [18]. The best model was the one with the lowest value of the Akaike information criterion (AIC). For the multiple comparison correction the permutation test with 10,000 permutes was performed in PowerMarker v.3.25 package (pcJ [19, 20].
In all the cases the results considered statistically significant at p<0.05.
Results
Genetic predictors of the non-response to etanercept
As a result of the comparative analysis it was shown, that the IL1B rs16944*TT genotype was significantly more common and the IL1B rs16944*C allele - significantly less common in JIA patients with the absence of the response to etanercept, than in those with its presence (*TT: p=0.025, pcor=0.023, 0R=13.00, 95% CI 1.57163.39; *C: p=0.044, pcor=0.046, 0R=0.33, 95% CI 0.13-0.89) (Table 1). The best inheritance model was the recessive (TT vs. CC+CT, p=0.014, 0R=13.0, 95% CI 1.26-133.64). Due to the small sample size, the stratification by sex was not carried out.
The NFKB1 rs28362491 polymorphism analysis showed that the frequency of the NFKB1 rs28362491*II genotype was significantly higher, and the frequency of the NFKB1 rs28362491*D allele was significantly lower in etanercept non-responders, than in responders (*II: p=0.043, pcor=0.042, 0R=5.75, 95% CI 1.28-22.26; *D: p=0.028, pcor=0.029, 0R=0.31, 95% CI 0.12-0.85) (Table 1). The log-additive model of inheritance was the best (2DD+ID vs. II, p=0.016, 0R=0.27, 95% CI 0.08-0.87).
For the other single nucleotide polymorphisms (SNPs) the differences were not significant (pcor>0.05). There was only a trend towards a lower frequency of the IL2RA rs2104286*G allele in JIA patients who did not respond to etanercept therapy in comparison with the responders (p=0.092, pcor=0.093).
ISSN 2304-3415, Russian Open Medical Journal
2018. Volume 7. Issue 2. Article CID e0204 DOI: 10.15275/rusomj.2018.0204_
Table 1. The distribution of the genotypes and alleles of the studied polymorphic loci in relation to the response to etanercept in JIA patients
Polymorphic loci
Response to etanercept
Absence Presence p-level nsufficient Sufficient p-level
Gene, rs Variants Abs. Freq. (%) Abs. Freq. (%) Abs. Freq. (%) Abs. Freq. (%)
TNFA GG 12 100.00 23 85.19 0.292 16 88.89 19 90.48 1.000
rs1800629 GA 0 0.00 4 14.81 0.292 2 11.11 2 9.52 1.000
AA 0 0.00 0 0.00 1.000 0 0.00 0 0.00 1.000
G 24 100.00 50 92.59 0.306 34 94.44 40 95.24 1.000
A 0 0.00 4 7.41 0.306 2 5.56 2 4.76 1.000
LTA AA 6 50.00 11 40.74 0.730 8 44.44 9 42.86 1.000
rs909253 AG 5 41.67 14 51.85 0.731 8 44.44 11 52.38 0.751
GG 1 8.33 2 7.41 1.000 2 11.11 1 4.76 0.586
A 17 70.83 36 66.67 0.797 24 66.67 29 69.05 1.000
G 7 29.17 18 33.33 0.797 12 33.33 13 30.95 1.000
IL1B CC 2 16.67 11 40.74 0.269 4 22.22 9 42.86 0.307
rs16944 CT 6 50.00 15 55.56 1.000 10 55.56 11 52.38 1.000
TT 4 33.33 1 3.70 0.025 4 22.22 1 4.76 0.162
c 10 41.67 37 68.52 0.044 18 50.00 29 69.05 0.107
T 14 58.33 17 31.48 0.044 18 50.00 13 30.95 0.107
IL2-21 GG ------- 11 91.67 19 70.37 0.228 14 77.78 16 76.19 1.000
rs6822844 GT 1 8.33 8 29.63 0.228 4 22.22 5 23.81 1.000
TT 0 0.00 0 0.00 1.000 0 0.00 0 0.00 1.000
G 23 95.83 46 85.19 0.261 32 88.89 37 88.10 1.000
T 1 4.17 8 14.81 0.261 4 11.11 5 11.90 1.000
IL2RA ......ÄÄ..... 11 91.67 18 66.67 0.131 17 94.44 12 57.14 0.011
rs2104286 AG 1 8.33 7 25.93 0.394 1 5.56 7 33.33 0.049
GG 0 0.00 2 7.41 1.000 0 0.00 2 9.52 0.490
A 23 95.83 43 79.63 0.092 35 97.22 31 73.81 0.004
G 1 4.17 11 20.37 0.092 1 2.78 11 26.19 0.004
IL6 GG 7 58.33 12 44.44 0.501 10 55.56 9 42.86 0.527
rs1800795 GC 5 41.67 13 48.15 0.742 8 44.44 10 47.62 1.000
CC 0 0.00 2 7.41 1.000 0 0.00 2 9.52 0.490
G 19 79.17 37 68.52 0.420 28 77.78 28 66.67 0.321
c 5 20.83 17 31.48 0.420 8 22.22 14 33.33 0.321
ILIO CC 5 41.67 14 51.85 0.731 8 44.44 11 52.38 0.751
rs1800872 CA 6 50.00 9 33.33 0.478 9 50.00 6 28.57 0.203
AA 1 8.33 4 14.81 1.000 1 5.56 4 19.05 0.349
C 16 66.67 37 68.52 1.000 25 69.44 28 66.67 0.813
A 8 33.33 17 31.48 1.000 11 30.56 14 33.33 0.813
MIF GG 6 50.00 15 55.56 1.000 10 55.56 11 52.38 1.000
rs755622 GC 5 41.67 11 40.74 1.000 6 33.33 10 47.62 0.516
CC 1 8.33 1 3.70 0.526 2 11.11 0 0.00 0.206
G 17 70.83 41 75.93 0.779 26 72.22 32 76.19 0.796
C 7 29.17 13 24.07 0.779 10 27.78 10 23.81 0.796
CTLA4 GG 5 41.67 11 40.74 1.000 8 44.44 8 38.10 0.752
rs3087243 GA 6 50.00 16 59.26 0.730 9 50.00 13 61.90 0.528
AA 1 8.33 0 0.00 0.308 1 5.56 0 0.00 0.462
G 16 66.67 38 70.37 0.794 25 69.44 29 69.05 1.000
A 8 33.33 16 29.63 0.794 11 30.56 13 30.95 1.000
NFKB1 II 6 50.00 4 14.81 0.043 8 44.44 2 9.52 0.025
rs28362491 ID 5 41.67 15 55.56 0.501 6 33.33 14 66.67 0.056
DD 1 8.33 8 29.63 0.228 4 22.22 5 23.81 1.000
1 17 70.83 23 42.59 0.028 22 61.11 18 42.86 0.119
D 7 29.17 31 57.41 0.028 14 38.89 24 57.14 0.119
PADI4 GG ------- 3 25.00 7 25.93 1.000 4 22.22 6 28.57 0.726
rs2240336 GA 7 58.33 17 62.96 1.000 11 61.11 13 61.90 1.000
AA 2 16.67 3 11.11 0.634 3 16.67 2 9.52 0.647
G 13 54.17 31 57.41 0.809 19 52.78 25 59.52 0.648
A 11 45.83 23 42.59 0.809 17 47.22 17 40.48 0.648
PTPN22 GG 10 83.33 19 70.37 0.693 14 77.78 15 71.43 0.726
rs2476601 GA 2 16.67 7 25.93 0.693 4 22.22 5 23.81 1.000
AA 0 0.00 1 3.70 1.000 0 0.00 1 4.76 1.000
G 22 91.67 45 83.33 0.487 32 88.89 35 83.33 0.533
A 2 8.33 9 16.67 0.487 4 11.11 7 16.67 0.533
Statistically significant results are in bold. Abs., absolute values; Freq., frequencies.
ISSN 2304-3415, Russian Open Medical Journal
2018. Volume 7. Issue 2. Article CID e0204 DOI: 10.15275/rusomj.2018.0204_
Genetic predictors of the insufficient response to etanercept
It was shown, that the IL2RA rs2104286*AA genotype was significantly more common, while the IL2RA rs2104286*AG genotype and the IL2RA rs2104286*G allele were significantly less common in JIA patients with the insufficient response to etanercept, than in those with the sufficient response (*AA: p=0.011, pcor=0.010, 0R=12.75, 95% CI 1.84-146.67; *AG: p=0.049, pcor=0.049, 0R=0.12, 95% CI 0.01-0.88; *G: p=0.004, pcor=0.005, 0R=0.08, 95% CI 0.01-0.53) (Table 1). The log-additive model described the results better than the others (2GG+AG vs. AA, p=0.0037, 0R=0.09, 95% CI 0.01-0.81).
Analysis of the NFKB1 rs28362491 polymorphism revealed a significant increase of the NFKB1 rs28362491*II genotype proportion, and a trend towards a decrease of the NFKB1 rs28362491*ID genotype proportion in JIA patients who did not achieve clinical remission on medication (on etanercept), compared with those who achieved (*II: p=0.025, pcor=0.026, 0R=7.60, 95% CI 1.53-38.68 and *ID: p=0.056, pcor=0.054) (Table 1). The best inheritance model was the dominant (ID+DD vs. II, p=0.011, 0R=0.13, 95% CI 0.02-0.74).
At the same time, for the other SNPs no significant differences were observed (pcor>0,05). 0nly testing the inheritance models revealed a trend towards the presence of an effect, that increases the risk of the insufficient response to etanercept, in the IL1B rs16944*T allele (log-additive model, 2TT+CT vs. CC, p=0.063) and the MIF rs755622*CC genotype (recessive model, CC vs. GG+GC, p=0.073).
Discussion
The analysis of the association between the polymorphic variants of the immune response mediator genes and the efficacy of the etanercept therapy in JIA patients was performed in this study. The predictors of the increased risk of the non-response to etanercept were the IL1B rs16944*TT (pcor=0.023), NFKB1 rs28362491*II (pcor=0.042) genotypes, and of the increased risk of the insufficient response to etanercept - the IL2RA rs2104286*AA (pcor=0.010), NFKB1 rs28362491*II (pcor=0.026) genotypes. The markers of the decreased risk of the non-response to etanercept were the IL1B rs16944*C (pcor=0.046), NFKB1 rs28362491*D (pcor=0.029) alleles, and of the decreased risk of the insufficient response to etanercept - the IL2RA rs2104286*AG genotype (pcor=0.049), IL2RA rs2104286*G allele (pcor=0.005).
According to the literature, the association of only the TNFA rs1800629 locus polymorphic variants was previously investigated with the etanercept efficacy in JIA. Schmeling H. and Horneff G. (2007) showed that the TNFA rs1800629*GG genotype serves as a protective marker in relation to non-achieving the ACR Pedi 30 response to etanercept in patients with rheumatoid factor negative polyarticular JIA, but not in the entire JIA group [21]. According to Basic J. et al. (2010), the ACR Pedi 50 response in a year after the etanercept initiation was observed significantly more frequent in polyarticular JIA course patients with the TNFA rs1800629*GG genotype, than in those with the TNFA rs1800629*AA genotype, but not with the TNFA rs1800629*A allele generally [22]. Cimaz R. et al. (2007) did not find the relationship of the TNFA rs1800629 locus polymorphic variants with achieving the ACR Pedi 30 response to TNFa inhibitors as a whole (infliximab, etanercept, adalimumab) in JIA patients [23]. These data are consistent with the results of the present work, where no association of the TNFA rs1800629 locus polymorphic
variants with the response to the etanercept therapy in the entire JIA group was found. Nevertheless, Hong Y. and Wang R. (2016) showed, that the frequency of the TNFA rs1800629*GG genotype was significantly increased in Chinese JIA patients achieved the ACR Pedi 50 response with the etanercept therapy [24].
It should be noted, that according to Sode J. et al. (2014), the NFKB1 rs28362491*D allele serves as a protective marker in relation to the non-response (European League Against Rheumatism (EULAR) criteria) to etanercept in seropositive rheumatoid arthritis patients from Denmark [25]. In addition, G^bura K. et al. (2017) showed, that the presence of the homozygous genotype NFKB1 rs28362491*II was associated with the increased risk of the non-response (EULAR criteria) to TNFa inhibitors (as a whole), whereas the presence of the NFKB1 rs28362491*D allele, and in particular the NFKB1 rs28362491*ID genotype, - with a higher efficacy of this treatment in rheumatoid arthritis patients from Poland [26]. The results of the current work also indicate, that the NFKB1 rs28362491*D allele reduces the risk of non-achieving the ACR Pedi 70 response to etanercept in JIA patients.
Conclusion
In this study the association of the alleles and genotypes of the IL1B rs16944, IL2RA rs2104286, NFKB1 rs28362491 polymorphic loci with the etanercept efficacy in JIA patients was established.
Acknowledgments
The work was supported by:
i) Government project: "Study of molecular genetic mechanisms of formation of multifactorial pathology", No. 115060810015 (08 June 2015).
ii) Grant of the Republic of Bashkortostan to young scientists and youth scientific teams, contract No. 6 (25 March 2016).
iii) The program "Participant of the Youth Scientific and Innovation Contest" ("UMNIK"), contracts No. 10/16859 (28 May 2012) and No. 10/20810 (01 July 2013).
Conflict of interest: none declared.
Ethical approval: All procedures performed in studies involving human participants were in accordance with the standards of the Local ethical committee of Bashkir State Medical University (Ufa, Russia) and with the 1964 Helsinki declaration and its later amendments or comparable ethical standards.
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Authors:
Liliia Sh. Nazarova - MD, Assistant, Department of Therapy and Clinical Pharmacology, Institute of Postgraduate Education, Bashkir State Medical University, Ufa, Russia. http://orcid.org/0000-0002-9666-5650. Ksenia V. Danilko - PhD, Associate Professor of the Department of Biology, Senior Researcher of the Central Research Laboratory, Bashkir State Medical University, Ufa, Russia. http://orcid.org/0000-0002-4374-2923. Viktor A. Malievsky - MD, DSc, Professor, Head of the Department of Hospital Pediatrics, Bashkir State Medical University, Ufa, Russia. http://orcid.org/0000-0003-0522-7442.
Akhat B. Bakirov - MD, DSc, Professor, Academician of Academy of Sciences of the Republic of Bashkortostan, Head of the Department of Therapy and Clinical Pharmacology, Institute of Postgraduate Education, Bashkir State Medical University; Director, Ufa Research Institute of 0ccupational Health and Human Ecology, Ufa, Russia. http://orcid.org/0000-0003-3510-2595.
Tatiana V. Viktorova - MD, DSc, Professor, Head of the Department of Biology, Bashkir State Medical University; Chief Researcher, Laboratory of Physiological Genetics, Institute of Biochemistry and Genetics, Ufa, Russia. http://orcid.org/0000-0001-8900-2480.
