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RESEARCH ARTICLES
Induced Pluripotent Stem Cells of Microtus levis x Microtus arvalis Vole Hybrids: Conditions Necessary for Their Generation and Self-Renewal
E. V. Grigor'eva123, A. I. Shevchenko123, S. P. Medvedev1 2 3 4, N. A. Mazurok123, A. I. Zhelezova1, S. M. Zakian1 2 3 4*
1Federal Research Center, Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentiev Ave., 10, 630090, Novosibirsk, Russia
institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Lavrentiev Ave., 8, 630090, Novosibirsk, Russia
3State Research Institute of Circulation Pathology, Ministry of Healthcare of the, Rechkunovskaya Str., 15, 630055, Novosibirsk, Russia
4Novosibirsk State University, Pirogova Str., 2, 630090, Novosibirsk, Russia *E-mail: [email protected]
Copyright © 2015 Park-media, Ltd. This is an open access article distributed under the Creative Commons Attribution License,which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
ABSTRACT Every year, the list of mammalian species for which cultures of pluripotent stem cells (PSCs) are generated increases. PSCs are a unique tool for extending the limits of experimental studies and modeling different biological processes. In this work, induced pluripotent stem cells (iPSCs) from the hybrids of common voles Microtus levis and Microtus arvalis, which are used as model objects to study genome organization on the molecular-genetic level and the mechanisms of X-chromosome inactivation, have been generated. Vole iPSCs were isolated and cultured in a medium containing cytokine LIF, basic fibroblast growth factor (bFGF), ascorbic acid, and fetal bovine serum. Undifferentiated state of vole iPSCs is maintained by activation of their endogenous pluripotency genes - Nanog, Oct4, Sox2, Sall4, and Esrrb. The cells were able to maintain undifferentiated state for at least 28 passages without change in their morphology and give rise to three germ layers (ectoderm, mesoderm and endoderm) upon differentiation.
KEYWORDS reprogramming, induced pluripotent stem cells, common voles.
ABBREVIATIONS iPSCs - induced pluripotent stem cells; mESCs - mouse embryonic stem cells; PSCs - pluripotent stem cells; ESCs - embryonic stem cells; AP - alkaline phosphatase; OSKM - transcription factors Oct4, Sox2, Klf4 and c-Myc; RT-PCR - reverse transcription followed by polymerase chain reaction.
INTRODUCTION
Currently, in addition to the traditional method of isolating pluripotent stem cells (PSCs) from early mammalian embryos, it has also become possible to induce pluripotency by reprogramming different types of terminally differentiated somatic cells [1-4]. Reprogramming of somatic cells to a pluripotent state allows one to obtain an unlimited amount of autologous iPSCs of any mammal, including humans. Reprogramming technology holds tremendous prospects not only for a personalized approach to the treatment of various diseases, but also serves as a tool for genetic modeling of many biological processes, including the study of early embryonic development, the signaling pathways and factors involved in pluripotency maintenance, and the triggering of differentiation.
Reprogramming of differentiated cells of various mammalian species to a pluripotent state is possible due to the overexpression of four transcription factors. These factors are Oct4, Sox2, Klf4, and c-Myc (OSKM). The genes are evolutionarily conserved in mammals [5, 6], and their products have a substantially overlapping set of key target genes, and thus genetic constructs expressing human or mouse OSKM can be frequently applied for cell reprogramming in different mammalian species [7-10]. To date, iPSCs of mouse, human, macaque, rat, dog, many farm animals and some other mammalian species, including prairie vole Microtus ochrogaster, have been obtained. The conditions for induction and maintenance of pluripotency vary among the species [11-19]. This is partly due to the species-specificity of the signaling cascades involved
in the activation and maintenance of an undifferentiated state in vitro, and due to various requirements for the composition of the culture medium, e.g. the presence or absence of bovine serum in the medium. Induction and maintenance of pluripotency are facilitated by the presence in the medium of inhibitors of various signaling pathways, inhibitors of histone deacetylases, histone and DNA methyltransferases, as well as antioxidants.
In the current study, the conditions for obtaining and maintaining cells with induced pluripotency of the common vole species of genus Microtus have been selected. Four closely related cryptic species, M. arvalis, M. levis, M. transcaspicus, and M. kirgisorum, comprising a group of common voles are the subject of a molecular genetic study of genome organization and the mechanisms of X chromosome inactivation [20-28]. The genes involved in the establishment and maintenance of pluripotency in these species have been studied, and their conservation has been demonstrated, including the expression pattern [5, 6, 29]. The existence of plu-ripotent cells of common voles might become an appropriate tool for molecular-genetic studies of these species.
Previously, we have undertaken numerous attempts to obtain PSCs of common vole species of the genus Microtus from early pre-implantation blastocysts and germinal cells [30]. Multipotent cell lines of the pre-implantation embryo, such as trophoblast stem cells and extraembryonic endoderm cells, have been derived [25, 31-33]. However, PSCs of common voles have not been obtained yet. In the experiments on somatic cell reprogramming presented in this work, we managed for the first time to determine the conditions that allow one to obtain and maintain PSCs of common voles.
MATERIAL AND METHODS
Cell cultures and media
Skin fibroblasts and brain cells were isolated from M. levis x M. arvalis hybrid embryos on day 19 (E19) of embryonic development and then cultured. The fi-broblasts were grown in DMEM/F12 (F12, Nutrient Mixture/Dullbecco's Modified Eagle Medium; Gibco) 1:1 supplemented with 10% fetal bovine serum (FBS; Gibco), 1x Non-Essential Amino Acids (NEAA; Gibco), 1x Pen Strep (100 u/ml penicillin, 100 |g/ml streptomycin; Gibco), 1x GlutaMAX (Gibco). Brain cells were grown in DMEM/F12 (1:1) with 10% FBS, 1x NEAA, 1x Pen Strep, 1x GlutaMAX for the first 3 days, then transferred to Schneider's medium: DMEM/F12 (1:1), 10 ng/ml bFGF (StemCell), 10 ng/ml EGF (Sigma), 2 |g/ml heparin (Sigma), 1x N2 Supplement (Gibco), 1x Pen Strep, 1x GlutaMAX.
In the first experiment, two media were used for the induction of pluripotency in M. levis x M. arvalis hybrid cells, which were previously used to obtain M. ochrogaster iPSCs [16]. The media were prepared from Advanced DMEM/F12 (1:1) (Gibco) containing 15% KSR (Knockout Serum Replacement; Gibco), 1x NEAA, 0.1 mM 2-mercaptoethanol, 1x Pen Strep, and 1x GlutaMAX. The first medium was supplemented with three inhibitors of signaling pathways (3iR conditions): CHIR99021 (3 |M, StemRD), PD0325901 (1 |M, StemRD), A83-01 (0.5 |M, Stemgent), and ROCK inhibitor (Y-27632, 10 |M, StemRD); the second medium did not contain any inhibitor. Both media contained 1,000 u/ml mouse LIF (mLIF, Invitrogen) and 2 |g/ml doxycycline (Sigma), which was added only at the initial stages of cultivation. Mouse embryonic fibro-blasts mitotically inactivated by a mitomycin C solution
Table 1. List of the antibodies used in the study
Antibodies Source Catalogue number Type Working dilutions
SSEA1 Santa Cruz Biotechnology sc-21702 mouse monoclonal IgM 1 : 50
OCT4 Santa Cruz Biotechnology sc-5279 mouse monoclonal IgG2b 1 100
SOX2 Santa Cruz Biotechnology sc-20088 rabbit polyclonal IgG 1 100
KLF4 Abcam ab104846 mouse monoclonal IgG1 1 200
P-III- tubulin Covance MMS-435P-100 mouse monoclonal IgG2a 1 : 1000
Nestin Abcam ab6142 mouse monoclonal IgG1 1 400
a-SMA Dako M0851 mouse monoclonal IgG2a 1 100
CD90 Millipore MAB1406 mouse monoclonal IgG2b 1 100
KRT18 Millipore MAB3234 mouse monoclonal IgG 1 200
SOX17 Millipore 09-038 rabbit polyclonal IgG 1 100
(10 mg/ml, Sigma) for 2 h were used as a feeder substrate for the generation and cultivation of vole iPSCs. Transfer of individual primary colonies at the first passage was performed with a glass capillary, and further using TrypLE (Gibco).
In further experiments on reprogramming in the medium based on Advanced DMEM/F12 (1:1) supplemented with 1x NEAA, 0.1 mM 2-mercaptoethanol, 1 x Pen Strep, and 1 x GlutaMAX, we varied the composition of 3iR, mLIF, PKCi (Go6983, Tocris, 5 ^M), bFGF, ascorbic acid, KSR, and FBS. iPSCs of hybrid M. levis x M. arvalis were derived in the medium, which included: Advanced DMEM/F12 (1 : 1), 7% KSR (Gibco), 7% FBS (Gibco), 0.1 mM 2-mercaptoethanol, 1x Pen Strep, 1x GlutaMAX, 1000 u/ml mLIF (Invitrogen), 10 ng/ml bFGF (StemCell), 50 mkg/ml ascorbic acid (Wako). The medium initially contained 2 ^g/ml doxycycline (Sigma), which was abrogated on day 14 of reprogramming. Vole iPSCs were frozen in 90% FBS and 10% DMSO.
Plasmid constructs, generation of lentiviruses, transduction scheme
Three plasmids were used in the experiments: 1) Te-tO-FUW-OSKM (Addgene Plasmid 20321) encoding mouse reprogramming factors OSKM; 2) FUdeltaGW-rtTA (Addgene Plasmid 19780) carrying tetracycline transactivator cDNA necessary for regulation of the transcriptional activity of the construct with OSKM by supplementing the growth media with doxycycline; 3) pGpur expressing a green fluorescent protein (EGFP) gene for monitoring transduction efficiency. Lenti-viruses were obtained by cotransfection of the plas-mids into 293FT cells with pxPAX2 (Addgene Plasmid 12260) and pMD2.G (Addgene Plasmid 12259) plasmids encoding the proteins required for packaging of viral
particles [34, 35]. Human embryo kidney cells, 293FT, were seeded at a density of 6 x 106 into T75 culture flasks and incubated overnight. Transfection was performed by the calcium phosphate method [36]. The medium with viral particles was harvested and filtered (0.45 ^m; Millipore) 48, 72, and 96 h after transfection. Viruses were concentrated using an ultracentrifuge (Beckman Coulter, Optima XE-90 Ultracentrifuge) for 90 min at 70, 000 g. A viral pellet was dissolved in 200 of F12/DMEM and kept in aliquots at -70oC.
The fibroblasts and cells isolated from the brain were seeded in 12-well plates at a density of 50 x 103 to 75 x 103 cells per well, respectively, 24 h before transduction. The cells were transduced for 4-6 passages. On the day of transduction, the medium with lentiviruses obtained using TetO-FUW-OSKM, FUdeltaGW-rtTA, or pGpur plasmids was added for 14-16 h, with a titer of about 3 x 107 infectious units per 1 ml (MOI 5-7.5) for each of the lentiviruses and 4 ^g/ml polybrene (Hexadimethrine bromide, Sigma). After 4 days, cells transduced by lentiviruses with reprogramming factors and tetracycline transactivator were passaged using TrypLE at a dilution of 1:10 to 1:20 (depending on cell density in a well) on mitotically inactivated mouse embryonic fibroblasts in culture media varying in composition. For determination of transduction efficiency, cells transduced with lentiviruses containing pGpur were used, and the assessment of the percentage of green cells was performed using a fluorescent microscope and/or flow cytometry 4 days after transduction.
Histochemical detection of endogenic alkaline phosphatase activity
The activity of endogenic alkaline phosphatase (AP) was measured histochemically according to [37]. Cells
Table 2. Primers and PCR conditions
Gene Nucleotide sequence Primers Mg2+ concentration, mM Annealing temperature, °C
ß -actin gacggggtcacccacactgt gag-tacttgcgctcaggaggag ß-actin-1 ß-actin-2 3 60
Nanog agtgtcttaaggacgcagaa atctcctaattgccaatacc Nanog QF1 Nanog QR1 3 60
Oct4 ccaagctgctgaagcagaaga ttt-gaatgcatgggagagcccag OCT4-2F OCT-5R 4 53
Sox2 tccatgaccagctcgcagacctac ccctcccaattcccttgtttctct Sox2F Sox2R2 3 60
Sall4 tcaccaacgccgtcatgttacagc ggtgggctgtgctcggataaatgt Sall4F Sall4R 2 60
Errß agctgcggctccttcatcaag cttg-tacttctggcggcctcc ERRB1F ERRB4R 1.5 63
were fixed by air-drying and incubated in a dye solution: 100 |M Tris-HCl pH 9.0; 100 |M NaCl; 5 |M MgCl2; 0.4 |g/ml naphthol phosphate (Sigma); 1 |g/ ml Fast Violet B Salt (Sigma) for 15-20 min in the dark at room temperature.
Immunofluorescence assay
Cells were fixed with 4% formaldehyde for 10-15 min at room temperature, washed with PBS, and incubated with 0.1% Triton X-100 and 2.5% FBS (or BSA) dissolved in PBS for 30 min at room temperature. Im-munoprecipitation was performed by using primary antibodies overnight at 4oC. A list of the primary antibodies used in this study is provided in Table 1. Localization of primary antibodies was visualized using secondary anti-rabbit or -mouse antibodies conjugated to the fluorescent dyes Alexa 488 and Alexa 568 (Life Technologies). Nuclei were stained with DAPI (Vector Laboratories).
In vitro differentiation of cell lines in embryoid bodies
Colonies of undifferentiated cells were mechanically transferred onto Petri dishes coated with a thin layer of 1% agarose in DMEM/F12 (1:1) with 10% FBS, 1x Pen Strep and 1x GlutaMAX. The formed embryoid bodies were cultured for 7 days in suspension and transferred onto Petri dishes coated with 0.1% gelatin for attachment. Attached embryoid bodies were grown for 14-20 days, followed by analysis of differentiated cells by im-munofluorescence assay or disaggregation using Try-pLE with further RNA isolation and RT-PCR.
RNA isolation, RT-PCR
RNA was isolated with Trizol Reagent (Ambion). Samples were treated with DNase I (Turbo DNA-free, Ambion) in order to prevent DNA contamination; cDNA was synthesized using Super-ScriptIII (Invitrogen). Primer sequences and reaction conditions for RT-PCR are shown in Table 2. For the transcription analysis of the exogenous lentiviral cDNA of OSKM in mouse cells, we used the primers and RT-PCR conditions listed in [34]. A negative control reaction (RT-), with the reaction solution containing all the components necessary for cDNA synthesis, except for reverse transcriptase, was performed for every primer pair.
Bisulfite sequencing of vole Oct4 gene promoter DNA
Bisulfite modification and purification of genomic DNA (500 ng) were conducted using EZ DNA Methylation -Direct Kit (Zymo Research). Modified DNA was further used for PCR with primers:
Oct4_Reg2_f2 (5'-TAAGAGGATGGGGGGG-TAGTGAAAG-3')
Oct4_Reg2_r2 (5'-GAAATCTAAAACCAAATATC-CAACCATAAA-3').
The obtained PCR products were cloned using pGEM-T Easy Vector System I (Promega). A total of 10 randomly selected plasmid clones of each DNA sample were sequenced using a universal M13 Reverse primer. Nucleotide sequences were analyzed with the QUMA software (Quantification tool for Methylation Analysis, http://quma.cdb.riken.jp/, [38]).
Cytogenetic analysis
Cells were fixed according to standard protocols [39] with several modifications: time of incubation with ethidium bromide (0.05%) - 3 h; with colcemid (10 |g/ml, Gibco) - 2 h; and hypotonic incubation -15-20 min.
Prior to staining, samples were incubated overnight at 50oC. A Hoechst 33258 (Sigma) solution at a concentration of 0.05 |g/ml was prepared using Hank's balanced solution (HBSS, Gibco). Metaphase spreads were stained in the Hoechst 33258 solution for 10 min, and then the samples were rinsed with water and placed in a acetate buffer (pH 5.5). The metaphase spreads were visualized using the microscope Ni-E (Nikon), Lucia software.
Cell analysis by flow cytometry
The number of EGFP- and SSEA1-positive cells was estimated using the BD FACS Aria and BD FACSCanto II systems with the BD FACS Diva software. Surface antigen SSEA1 was determined using antibodies (sc-21702, Santa Cruz Biotechnology) according to the manufacturer's protocol.
RESULTS
Obtaining doxycycline-dependant iPSC-like vole cells and their characterization
Common vole iPSCs were obtained using lentiviruses expressing cDNA of four key mouse reprogramming factors OSKM under a doxycycline-regulated promoter. Transcription from this promoter can be activated by adding an antibiotic in the culture medium; however, the cells should be previously transduced with len-tiviruses expressing cDNA of a tetracycline-dependant transactivator. This system, where mouse OSKM expression is modulated by the addition of doxycycline, was successfully utilized previously for obtaining human and mouse iPSCs [34]. Mice and voles belong to the same family of rodents (Muridae), order Rodentia, and exhibit high similarity of OSKM genes [40]. The advantage of this system, in our opinion, is the fact that all four reprogramming factors are delivered into a cell by the same viral particle.
Cells isolated from hybrid embryos of M. levis x M. arvalis, which are used as a model object for study-
Table 3. Conditions tested in experiments on obtaining iPSC lines of interspecies M. levis x M. arvalis vole hybrids
Cell type (experiment №) Cell number, 103 Transfection efficiency, % Culturing conditions Number of primary colonies of AP+ cells Number of iPSC lines
Brain cells 37.5 75 KSR, mLIF 85
(I exp.) 37.5 KSR, mLIF, 3iR 200
Fibroblasts 25 86.5 KSR, mLIF
(I exp.) 25 KSR, mLIF, 3iR
12.5 KSR, mLIF, bFGF, AA
Fibroblasts 12.5 32.9 KSR, mLIF, bFGF, AA, 3iR
(II exp.) 12.5 KSR, FBS, mLIF, bFGF, AA 70 2
12.5 KSR, FBS, mLIF, bFGF, AA, 3iR 100
Note. AA - ascorbic acid.
ing the phenomenon of non-random inactivation of the X chromosome [27, 28], were transfected with lentiviral constructs. Two types of hybrid cells were used: skin fibroblasts and cells isolated from the brain. Transduc-tion was performed according to the scheme depicted in Fig. 1A. Transduction efficiency was assessed using lentiviruses expressing a green fluorescent protein by flow cytometry, and fluorescent microscopy was 86.5% in fibroblasts (Fig. 1B) and 75% in brain cells (Fig. 1C).
Pluripotency in common vole cells was induced in two types of media that had previously been used for obtaining iPSCs from the fibroblasts of prairie vole M. ochrogaster [16]. The first type of media included Advanced DMEM/F12 with 15% KSR and mLIF, the second medium contained the same components, but it also included an inhibitor cocktail called 3iR. The cocktail 3iR contains inhibitors of kinases MEK/ERK and GSK3b (PD0325901 and CHIR99021, respectively), an antagonist of the IL-type receptor TGF-B (A83-01) used for obtaining mouse and rat PSCs and maintaining them in undifferentiated state, and a ROCK inhibitor that enhances the survival of single cells in culture [41-46].
Four days after transduction, M. levis x M. arvalis hybrid cells s were transferred on mitotically inactivated mouse embryonic fibroblasts and the medium with or without 3iR for obtaining iPSCs was added. The first morphological changes appeared 24 h after cell transfer, and an increase in cell proliferation was noted. After 5-8 days, the transduced cells that were isolated from the brain began to merge into primary homogeneous colonies (Fig. 1D), whereas the transduced fibroblasts did not give rise to such PSC-like primary colonies (Table 3).
Primary colonies obtained during brain cell reprogramming were transferred into individual wells by disaggregation with a glass capillary on day 10-13 after the start of the experiment. Cell morphology remained the same as in the case of mESCs: three-dimensional dense colonies with tight intercellular contacts (Fig. 1E, F). The cells in these colonies had a high nuclear/cytoplasmic ratio, which is a characteristic of ESCs. After transfer of primary colonies, most cells underwent differentiation on the first passage. However, about 40% of the cells retained an ESC-like morphology. The difference in the level of endogenous AP was detected in selected colonies by histochemi-cal staining (Fig. 1G). Cell lines with no detectable AP activity were excluded from further analysis. Thus, a total of 11 cell lines obtained in the presence of inhibitors (viBr; vole inhibitor Brain) and 10 lines obtained in their absence (vBr) were selected based on the results of an AP activity analysis at early passages. It should be noted that most of the cells did not express one of the major early markers of pluripotency specific to mouse PSCs, surface antigen SSEA1. The iPSC-like cells underwent rapid proliferation in the medium containing doxycycline without altering the morphology for approximately 40 passages (more than 120 days). The cells were passaged every 2-3 days at a dilution of 1:8 to 1:10: they resisted repeated freezing in liquid nitrogen with further thawing without changing their phenotypic characteristics.
We repeatedly tried to culture the cell lines in the absence of doxycycline, abolishing the expression of transgenic OSKM, but this led to the flattening of the plump colonies of iPSC-like cells and differentiation by the second day of growth.
Thus, culture conditions that allowed to successfully obtain M. ochrogaster iPSCs failed to induce pluripo-tency in M. levis x M. arvalis hybrid cells. When reprogramming in these media, the fibroblasts of common vole hybrids did not form even primary colonies and the cells isolated from the brain that nonetheless demonstrated primary colony formation, but yet did not show activation of self-renewal mechanisms, which would have enabled them to maintain an iPSC-like morphology in the absence of OSKM expression.
Further, we focused on the selection of culture medium components which would allow the induction and maintenance of pluripotency in common vole cells in vitro. In order to achieve this, we studied various combinations of such medium components as mLIF, PKCi, bFGF, and ascorbic acid, which are used for obtaining and maintaining pluripotent cell cultures of other mammalian species [7, 9, 13, 47-55]. Medium components were tested in two iPSC-like doxycycline-depen-dent lines, one of which had been obtained and grown in a medium supplemented with inhibitors (viBr3 line), and a medium without inhibitors (vBr3).
A peculiar effect was observed upon the addition of substance Go6983, a protein kinase C inhibitor (PKCi), to the medium, which is able to trigger and maintain the self-renewal capability of rodent pluripotent cells without activating LIF/STAT3- or suppressing ERK/ GSK3-signaling pathways [48, 50]. The appearance of 3-5% SSEA1-positive cells (Fig. 1H) was observed on the 9th day of culturing in both iPSCs-like cell lines in the presence of PKCi, and the percent of these cells increased to 80-90% by day 19 (Fig. 1I). However, despite the expression of SSEA1, one of the markers in mouse, rat and M. ochrogaster pluripotent cells cultured in vitro [16, 56, 57], iPSC-like cells of M. levis x M. arvalis hybrids still retained the ability to differentiate in the absence of doxycycline. A more significant for the reprogramming of common vole cells result has been obtained using a medium containing all of the three components: mLIF, bFGF, and ascorbic acid, which for the first time allowed us to grow iPSC-like cultures of M. levis x M. arvalis hybrids for six passages in the absence of doxycycline without visible changes in morphology. Activation of endogenous pluripotency genes Oct4 and Nanog expression has been noted in cell cultures (Fig. 1J). No similar effect has been shown upon addition of mLIF, bFGF, or ascorbic acid alone or in pairwise combinations to the culture medium for viBr3 and vBr3. However, since viBr3 and vBr3, which were cultured without doxycycline but in the presence of mLIF, bFGF, and ascorbic acid, showed differentiation after the sixth passage, we decided to perform the second experiment on reprogramming common vole cells, applying from the first stages the same condi-
tions that allowed us to maintain for some period M. le-vis x M. arvalis hybrid iPSCs in the medium without doxycycline.
Successful derivation of doxycycline-independent vole iPSCs
New reprogramming of M. levis x M. arvalis hybrids was conducted according to the previously described scheme (Fig. 1A) using embryonic skin fibroblasts. The efficiency of transduction was 32.9% (Fig. 2A). Taking into account the experience gained in the previous experiment, fibroblasts were transferred to the medium for reprogramming containing mLIF, bFGF, and ascorbic acid after transduction with lentiviruses expressing OSKM and a tetracycline-dependent transactivator. As in the previous experiment, we used a medium with or without the 3iR cocktail. Furthermore, we varied the content of KSR and FBS in the media: some media contained 15% KSR as described above, whereas others included a mixture of 7% FBS and 7% KSR.
Primary colonies were observed in fibroblasts already by the third day of culturing (on the 7th day of transduction) in reprogramming media containing a mixture of FBS and KSR. The formation of primary colonies was not shown for the medium containing 15% KSR (Table 3). By day 10-14 from the start of transduction, six primary colonies from the plates with 3iR and eight colonies from the plates without 3iR had been transferred from the cultures reprogrammed in the presence of KSR and FBS. Doxycycline was canceled 14 days after the start of reprogramming, i.e. on the first passage after seeding primary colonies in individual wells. As a result of culturing without doxycycline, most of the colonies underwent differentiation or were excluded after the first analysis of AP activity. Thus, two clones expressing AP and growing in the medium without inhibitors, 14vf2 and 14vf7, were selected. Two cell lines obtained in this experiment were cultured in the medium containing 7% FBS, 7% KSR, mLIF, bFGF, and ascorbic acid without changes in morphology for at least 28 passages (more than 4 months) in the absence of dox-ycycline. Removal of any of the medium components, namely mLIF, bFGF, or ascorbic acid, and a reduction in the FBS concentration lower than 7% led to gradual differentiation of the obtained iPSC lines.
Properties of doxycycline-independent vole cell lines
The obtained cell lines grow as flatten colonies with tight intercellular contacts and clear colony edge resembling human PSCs (Fig. 2B). Cell colonies grew pushing out the feeder cells and attached to the plastic-like human ESCs/iPSCs, but not above the feeder as mESCs. The proliferation intensity of the common
vole iPSC lines was comparable to that of human PSCs. It was found that supplementation of the medium with a ROCK inhibitor significantly enhances cell survival both during mechanical transfer (by capillary) or upon using TrypLE.
More than 70% of the cells in both iPSC lines exhibited the expected number of autosomes, equal to 50; X chromosome from M. levis and Y chromosome from M. arvalis (Fig. 2C).
A histochemical analysis demonstrated AP activity in undifferentiated cell lines (Fig. 2D), which was not detected after differentiation. Unlike in doxycycline-dependent lines, transcription of the introduced construct carrying reprogramming factors was not detected in stable iPSC lines of M. levis x M. arvalis hybrids (Fig. 2E). Moreover, both cell lines exhibited demethyl-ation of CpG dinucleotides in the promoter of vole Oct4, which is indicative of its reactivation (Fig. 3A).
An immunofluorescence analysis showed that in undifferentiated state in the early passages the obtained cell lines expressed one of the key markers of pluripotency - surface antigen SSEA1 (Fig. 2F), which is specific to mESCs/iPSCs. Figure 2F clearly shows that staining both for AP and SSEA1 is located in the most bulky, tight undifferentiated part of the colony, while the upper left edge of the colony, which contains spread differentiated cells, is not stained either for AP or for SSEA1. However, after a series of passages we failed to detect SSEAl-expressing cells. In M. levis x M. arvalis hybrid iPSCs, we also detected the expression of the key genes of pluripotent state Oct4 and Sox2, which remained stable during cell growth (Fig. 2G).
In both lines of M. levis x M. arvalis hybrid iPSCs the method of RT-PCR revealed expression of the endogenous genes Nanog, Oct4, Sox2, Sall4, and Esrrß, which are essential for maintaining the pluripotent state in mammalian cells. The initial line of embryonic skin cells lacked transcripts of these genes (Fig. 3B). Thus, taking into account the PSC-like morphology of the cell colony, AP expression, demethylation of the Oct4 promoter, expression of Nanog, Oct4, Sox2, Sall4, and Esrrb, and unlimited proliferation in the absence of doxycycline in the culture without change in cell morphology, we can claim that we managed to obtain pluripotent iPSCs of M. levis x M. arvalis interspecific hybrids.
In order to study the ability of the cell lines to differentiate in vitro, we obtained embryoid bodies, which had already formed in the suspension culture by day 2 (Fig. 4A). Analysis of differentiated derivatives by im-munofluorescent staining with antibodies to markers of specific cell types revealed derivatives in all three primary germ layers: ectoderm (Nestin, ß-III-tubulin),
endoderm (SOX17, KRT18), and mesoderm (a-SMA, CD90) (Fig. 4B).
Investigating the spontaneous differentiation of M. levis x M. arvalis hybrid iPSCs that have undergone successful reprogramming in culture using antibodies that detect only endogenous OCT4 and KLF4, we found that expression of KLF4 is absent in pluripotent cells, but it appears at the beginning of their differentiation, correlating with the loss of the transcription factor OCT4 (Fig. 4C).
DISCUSSION
We have attempted to obtain iPSCs of hybrids from crossing M. levis and M. arvalis species, which belong to a group of common voles, genus Microtus. The first experiments on obtaining common vole iPSCs were performed using the same culture media and factors that had previously allowed to induce pluripotency and obtain iPSCs of prairie vole M. ochrogaster [16]. Prairie vole iPSCs were obtained in the presence of a KSR substitute for fetal bovine serum, as well as LIF cytokine, which triggers a key signaling cascade in mouse and rat pluripotent cells [57-59]. Generation of M. ochrogaster iPSCs can be achieved in the presence of the inhibitors CHIR99021, PD0325901, and A83-01 in the medium. Nevertheless, the induction of pluri-potency did not take place upon reprogramming of common vole cells using four OSKM factors and a medium containing LIF and KSR. After careful selection of conditions, hybrid M. levis x M. arvalis iPSCs were obtained in a medium containing mLIF, bFGF, ascorbic acid, and a mixture of 7% FBS and 7% KSR. It is interesting that in most cases could not we obtain even primary iPSC-like colonies during the reprogramming of M. ochrogaster cells in a medium containing bFGF and FBS.
Our experience shows that mouse OSKM, which is used for the induction of pluripotency in somatic cells of different types and in different species, can be effective in obtaining common vole iPSCs. However, the presence of LIF cytokine in the medium, an important factor in the formation and maintenance of undiffer-entiated state in ESCs and iPSCs in rodents (mouse, rat, as well as prairie vole) [16, 57-59], is not sufficient for the induction and maintenance of pluripotency in common vole cells in vitro. This result is consistent with the reports of unsuccessful attempts to obtain ESCs of common vole group species from the inner cell mass of blastocysts in the presence of mouse or M. levis LIF [31]. Taken together, these data allow one to suggest that the signaling pathway triggered by cytokine LIF, due to some species-specific features of the common vole, cannot independently provide pluripotency in in vitro conditions.
vole embryo (E19)
fibroblasts and brain cells E19 (5p)
I
lentiviral transduction of Oct4, Sox2, Klf4 and c-Myc
cell plating on feeder layer (1:20) in the iPSCs medium
colony transfer
generation and characterization of vole iPSCs
10-17
18-36
A
0
4
vEFSkRA
Vole Brain
viBr3-9dPKCi
4.6% SSEA1
I' 75% EGFP
GFP
G *
Alexa 488
m1 io3 to* h'
Alexa 488
vBr viBr
bFGF bFGF
mLIF bFGF bFGF mLIF mLIF bFGF bFGF mLIF
PKCi AA AA mLIF AA PKCi AA AA mLIF AA
- +
Oct4 Nanog ß-actin
Fig. 1. Obtaining and characterizing doxycycline-dependent iPSC-like lines of M. levis x M. arvalis hybrid cells. A - scheme of the experiment on obtaining iPSCs of the common vole of genus Microtus. B, C - assessment of the efficiency of the transduction of the embryonic skin fibroblasts (vEFSkRA cell line) and brain cells (Vole Brain) of hybrid voles with lentivirus expressing EGFP (green signal) by fluorescence microscopy and flow cytometry. The percentage of GFP-positive cells among the fibroblasts and brain cells is 86.5% and 75%, respectively. D - primary colony morphology on the 8th day of the reprogramming of cells isolated from the brain. E - colony morphology on the 13th day of reprogramming of cells isolated from the brain. F - morphology of viBr3 cell line colonies grown in the medium supplemented with mLIF + 3iR, passage 3. G — histochemical assay of endogenous AP activity in the viBr3 cell line, passage 2. H, I — data of immunofluorescence analysis and flow cytometry on the presence of SSEAl-positive cells in the viBr3 line on days 9 and 19 of culturing in the presence of PKCi, respectively. Nuclei are stained with DAPI (blue signal). J — RT-PCR analysis of Oct4 and Nanog expression in the vBr3 and viBr3 cell lines after culturing for 3 passages in the media supplemented with various components. AA - ascorbic acid. Scale bar B—D, H - 100 pm, E—G, I - 500 pm
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Fig. 2. Obtaining and characterizing iPSCs of common vole M. levis x M. arvalis hybrids. A - efficiency of the transduction of vole embryonic fibroblasts (vEFSkRA) with a lentivirus expressing GFP (green signal), and assessment of the percentage of GFP-positive cells (32.9%) by fluorescence microscopy and flow cytometry. B -morphology of 14vf7 cell line colonies at passage 7. C — metaphase spread of 14vf7, passage 13. X lev. - X chromosome of M. levis, Y arv. - Y chromosome of M. arvalis. D - histochemical detection of endogenous AP activity, 14vf7 cell line, passage 6. E — RT-PCR analysis of the expression of the construct with exogenous factors of reprogramming (OSKM) in iPSC lines of common vole hybrids. F - immunofluorescence analysis of SSEA1 expression (red signal) and histochemical detection of AP activity, 14vf7 line, passage 4. Nuclei are stained with DAPI (blue signal). G - immunofluorescence analysis of pluri-potency markers OCT4 (red signal) and SOX2 (green signal). Nuclei are stained with DAPI (blue signal). Scale bar A, D, F, G - 100 pm, B - 500 pm
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Fig. 3. Analysis of CpG dinucleotide methylation in the Oct4 gene promoter and expression of genes specific for pluripotent cells in common vole iPSCs. A — comparison of CpG dinucleotide methylation of the Oct4 promoter in the obtained iPSC lines (14vf2, 14vf7) and initial line (vEFSkRA) of embryonic skin fibroblasts. Schematic distribution of CpG dinucleotides in a mouse and a common vole Oct4 promoter is presented at the top. Light and dark circles - unmeth-ylated and methylated CpG dinucleotides, respectively. B - transcriptional activity of the genes responsible for the pluripotent state in the iPSC lines 14vf2 and 14vf7 and their differentiated derivatives (14vf2-EB and 14vf7-EB). Control -initial cell line vEFSkRA. (RT-) - negative control of reverse transcription reaction
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Fig. 4. Spontaneous differentiation of common vole iPSCs. A - morphology of embryoid bodies formed from 14vf2 cells in suspension culture in 5 days. B - immunofluorescence analysis of differentiated derivatives of common vole iPSCs. Identification of ectoderm markers: P-NI-tubulin (red signal), Nestin (green signal); mesoderm: a-SMA (red signal), CD90 (green signal); endoderm: KRT18 (red signal), SOX17 (green signal). C — immunofluorescent detection of the transcription factors OCT4 (red signal) and KLF4 (green signal). Nuclei are stained with DAPI (blue signal). Scale bar A - 500 pm, B, C - 100 pm
The factors bFGF and mLIF comprised the key combination for the induction and maintenance of pluripo-tency in common vole cells. Factor bFGF is known to participate in the triggering of the main signaling cascade of PSCs in such species as human, monkey, dog, cow, horse, and sheep [7, 9, 13, 15, 17, 51-55, 60-62]. A combination of LIF and bFGF is also used for the induction and maintenance of pluripotency in many mammalian species, including human [63], rabbit [13], dog [62], horse [7, 17], and sheep [9]. Comparison of human PSCs obtained and cultured in different conditions one of which includs bFGF only, and another bFGF, and LIF together showed that iPSCs and ESCs maintained using two factors are more similar in their characteristics of the transcriptome and epigenome to pluripotent cells of early embryos [63].
An important medium component that allowed us to conduct the reprogramming of differentiated cells of common voles to a pluripotent state is ascorbic acid. It has previously been shown that ascorbic acid possesses antioxidant properties, as well as activates histone de-methylases and the TET proteins responsible for the most important epigenetic transformations upon pluri-potency induction, which, in particular, is essential for the initiation of endogenous Oct4 and Nanog expression in reprogrammed cells [47, 49 ].
It has been demonstrated on many mammalian species that it is preferable to use a medium supplemented with KSR, not FBS, when working with pluripotent cells [10, 13, 15, 16, 60]. However, during reprogramming of common vole fibroblasts to a pluripotent state, primary cell colonies were only obtained in media containing not less than 7% FBS. Moreover, substitution of FBS with KSR in the culture medium induced differentiation of the obtained common vole iPSCs even in the presence of growth factors.
The presence of mLIF, bFGF, ascorbic acid, and FBS in the culture medium is essential for maintaining the self-renewal and pluripotency capabilities of common vole iPSCs. Removal of any of these components triggers differentiation.
The obtained stable common vole iPSC lines share the properties of pluripotent cells. They exhibit AP activity and express the endogenous transcription factors Nanog, Oct4, Sox2, Esrrb, and Sall4, which are necessary for maintaining PSCs in the undifferenti-ated state [64-68]. Hereupon, the promoter region of Oct4 is more hypomethylated in iPSCs than in embryonic fibroblasts. The obtained lines of common vole pluripotent cells are capable of unlimited self-renewal and differentiation in vitro into derivatives of the three primary germ layers. Nevertheless, unlike M. ochrogaster iPSCs, stable cell lines of common voles
with induced pluripotency do not maintain SSEA1 expression during culturing, and they also do not express KLF4. Probably, this may be due to the fact that various signaling cascades participate in maintaining the pluripotency of M. ochrogaster and common vole iPSCs. The expression of KLF4 and SSEA1 is specific to PSCs in which a key signaling cascade providing pluripotency is triggered by cytokine LIF and varies or absent in PSCs, the pluripotency of which is supported by a bFGF-activated signaling cascade [61, 6971]. Thus, pluripotent cell lines derived from postimplantation mouse embryos in the presence of bFGF do not express KLF4, unlike ESCs and iPSCs cultured with LIF [71, 72]. Sheep, macaque, and human PSCs obtained in the presence of bFGF do not exhibit the SSEA1 surface antigen [8, 15, 61, 69]. It is noted that the pluripotent cells maintained with bFGF exhibit flatter morphology and proliferate slower [8, 72]. These two properties of bFGF-dependent pluripotent cells are specific to common vole iPSC lines. To speculate on whether the obtained iPSCs of M. ochrogaster and common voles fully reflect the properties of plu-ripotent cells of these species appears impossible: ESC lines that serve as a standard of pluripotency are absent both in prairie and common vole cultures. Nothing is known either about the properties of pluripo-tent cells of the pre- and postimplantation embryos of these species in vivo.
Thus, the technology of reprogramming by overexpression of four OSKM transcription factors allowed us to obtain for the first time common vole iPSCs, plu-ripotent cell lines that had been previously impossible to grow as a culture. These lines are to be used to study the processes of early development and pluripotency genes in common voles. We hope that the experience gained in the course of this work will allow us to further develop more effective approaches for the reprogramming of somatic cells of common voles and isolate ESCs from early preimplantation blastocysts and germinal cells of these rodents.
CONCLUSION
In this study, iPSCs of common vole M. levis x M. arvalis hybrids were obtained in a medium containing cytokine LIF, bFGF, ascorbic acid, and FBS. Common vole iPSCs obtained in these conditions are capable of self-renewal, they express the pluripotency genes Oct4, Nanog, Sox2, Sall4, and Esrrb and form derivatives of the three primary germ layers during differentiation in vitro. The results of our work will allow researchers to assess diversity and species-specific features in induction and maintenance of the pluripotent cells of various mammalian species.
The authors express their deep appreciation to I.S. Zaharova for her help in conducting experiments
and processing the data of flow cytometry, E.A. Elisaphenko for assistance in designing primers for
RT-PCR, E.A. Vaskova, A.V. Vyalkova and D.R. Bayzigitov for participation in several stages of the culturing work. The authors are also grateful to Rudolf Jaenisch, Konrad Hochedlinger and Didier Trono for
plasmids located in the Addgene depository. Work on the BD FACS Aria equipment was performed at the "Flow Cytometry" Center of Collective Use in ICG SB RAS.
This work was supported by RFBR grant № 15-0403947 and budget project of the Institute of cytology and genetics SB RAS VI.60.1.2.
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