Научная статья на тему 'Genomic and transcriptomic survey of osmotrophic euglenid Rhabdomonas costata'

Genomic and transcriptomic survey of osmotrophic euglenid Rhabdomonas costata Текст научной статьи по специальности «Биологические науки»

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Protistology
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Текст научной работы на тему «Genomic and transcriptomic survey of osmotrophic euglenid Rhabdomonas costata»

Protistology ■ 77

gene transcription level. In the present investigation, we studied the acute toxicity of heavy metal -cadmium and the transcriptional changes of hsp70, metallothionein and glutathione peroxidise gene in spirotrich ciliates. The effect of cadmium on the expression of these gene transcripts was investigated by real-time qPCR. The gene expression increased significantly in cadmium treated cells against the control cells indicating that these genes may be involved in cellular defence mechanisms by elevating their gene expression against heavy metal-induced stress.

EVALUATION OF ACUTE TOXICITY OF HEAVY METALS AND THE ACTIVITY OF ANTIOXIDANT ENZYMES IN FRESHWATER CILIATES

Somasundaram S.1, Abraham J.S.1, Toteja R.1, Makhija S.1, Gupta R.2

1 - Acharya Narendra Dev College, University ofDelhi, Delhi, India

2 - Maitreyi College, University ofDelhi, Delhi, India spoorna4@gmail.com; ravitoteja@andc.du.ac.in Heavy metal concentration in the environment is increasing world-wide due to anthropogenic activities and India is no exception to this. Metals are biologically important though increase in the threshold concentration of heavy metal in the environment may interfere with the metabolic activity of organisms. As studies on the cellular level could detect stress reactions earlier in time compared to common physiological methods, and since ciliates offer higher sensitivity towards heavy metals as compared to other microorganisms mainly due to lack of cell wall, ciliates were used as model organism in this study. In the present investigation, the toxicity of heavy metals, viz., Cadmium and Copper was assessed in freshwater ciliates; Tetmemena sp. and Euplotes sp. It was noted that growth rate exhibited inverse relationship with the heavy metal concentration. Mortality rate and various doses of heavy metals (control, LC30, LC50 & LC70) were determined in the ciliates. Generation of reactive oxygen species (ROS) was determined in these ciliates by using specific fluorescent dye in the presence of heavy metals. Increase in ROS production indicated that heavy metal stress induced ROS in living cells. Since it is known that antioxidant enzymes get activated to detoxify ROS, activity of superoxide dismutase (SOD) and glutathione peroxidase (GPx) were determined in ciliates at various doses of heavy metals. The levels of SOD and GPx were found to be significantly higher in the presence of heavy metals. This study indicates that antioxidant enzymes can be used as an effective

biomarker to evaluate cytotoxic effect of heavy metals.

GENOMIC AND TRANSCRIPTOMIC SURVEY OF OSMOTROPHIC EUGLENID RHAB-DOMONAS COSTATA

Soukal P.1, Hrda S.1, Karnkowska A.1, Strnad H.2, Hroudova M.2, Vlcek C.2, Hampl V.1

1 - Department of Parasitology, Charles University in Prague, Czech Republic

2 - Institute of Molecular Genetics, Academy of Sciences, Czech Republic vlada@natur.cuni.cz.

Euglenids represent a diverse group of protists with diverse modes offeeding including heterotrophy and photosynthesis, e. g. in Euglena gracilis. Until today, there is not available any complete genome sequence of euglenids and this probably represents the biggest gap in the sampling of eukaryotic genomes. We are running genomic and transcriptomic projects on a primary osmotroph Rhabdomonas costata. To avoid bacterial contamination, the DNA sample was prepared from cells picked using laser microdissection and amplified by GenomePlex®. Almost 1GB of reads was generated in four runs on Illumina MiSeq platform. The current assembly is too fragmented to be used for genome annotation, nevertheless the comparison of transcriptomic and genomic data allow us to estimate gene density and the features of introns. Annotation of the mitochondrial backbone metabolism provides the first data on Rhabdomonas mitochondrion.

GENE TRANSFER ACCOMPANYING THE SECONDARY ENDOSYMBIOSIS OF EUGLENID PLASTID

Soukal P.1, Hrda S.1, Karnkowska A.1, Yubuki N.12, Hroudova M.3, Vlcek C.3, Elias M.4, Hampl V.1

1 - Charles University in Prague, Faculty of Science, Department of Parasitology, Prague, Czech Republic

2 - Charles University in Prague, Faculty of Science, Department of Zoology, Prague, Czech Republic

3 - ASCR, v. v. i., Institute of Molecular Genetics, Department ofGenomics andBioinformatics, Prague, Czech Republic

4 - University of Ostrava, Faculty of Science, Life Science Research Centre, Ostrava, Czech Republic vlada@natur.cuni.cz.

Autotrophic euglenids (Euglenophyta) form a monophyletic group with secondary green plastids, which were most probably acquired by their common ancestor. However, the acquisition of the plastid earlier in the evolution of euglenids (plastid-early hypothesis) cannot be ruled out. The process of organelle acquisition is accompanied by

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